usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 37.892 36.0669285714286 30.9455 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 984 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 620 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 620 Number of spheres polar: 182, nonpolar: 335, out of current total: 620 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.89935 47.78302 26.15002 46.05080 20.94936 40.87417 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 163 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 105 Spheres center of coords (x y z): 39.056153047619 37.2771943809524 31.7322760952381 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.29016161807877 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 14