usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 33.4179411764706 22.4051176470588 27.4785882352941 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1087 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 744 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 744 Number of spheres polar: 438, nonpolar: 244, out of current total: 744 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.49325 43.26160 12.61300 32.39301 17.55269 37.47566 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 134 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 91 Spheres center of coords (x y z): 35.2850784615385 24.1584026373626 29.9494012087912 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.68091322548999 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 17