usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 26.4984375 3.8740625 51.4969375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 922 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 591 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 580 Number of spheres polar: 143, nonpolar: 276, out of current total: 580 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.53043 36.37291 -6.09193 13.73425 41.61632 59.76163 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 153 Spheres center of coords (x y z): 25.2138202614379 1.67714555555556 52.7122862745098 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9432885766913 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 16