usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 32.5750833333333 21.82775 26.8224166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 990 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 715 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 715 Number of spheres polar: 429, nonpolar: 227, out of current total: 715 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.72631 42.52406 12.27042 30.80312 17.50671 36.79924 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 182 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 128 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 84 Spheres center of coords (x y z): 34.9495307142857 24.1831389285714 30.0872911904762 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08315400179948 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 12