usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 33.373 22.2160588235294 27.1522941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1046 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 750 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 750 Number of spheres polar: 408, nonpolar: 272, out of current total: 750 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.46668 43.19596 16.69400 32.17587 17.25909 37.14248 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 184 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 136 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 101 Spheres center of coords (x y z): 35.2789316831683 24.1115086138614 30.1689148514852 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.82541587296571 Final number of output spheres is: 45 Number of polar spheres: 29 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 17