usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 25.4093225806452 -1.40712903225806 54.1064193548387
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1078
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 664
WARNING: removing a crystallographic sphere that is distance 7.09598294811931 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 8.48797178364774 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 9.26185515973987 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 8.75157540103495 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 659
Number of spheres polar: 110, nonpolar: 329, out of current total: 659
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.43467 35.37055 -11.34256 8.47988 44.14443 61.24746
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 231
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 220
Spheres center of coords (x y z): 25.5657853636364 -0.149558681818182 52.7983334090909
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.28924408567374
Final number of output spheres is: 45
Number of polar spheres: 6
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 27