usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 34.3958888888889 22.5046111111111 27.845 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1013 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 723 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 723 Number of spheres polar: 363, nonpolar: 287, out of current total: 723 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.39957 43.68469 13.19952 32.38697 17.86542 37.84325 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 318 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 262 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 191 Spheres center of coords (x y z): 35.474017434555 24.4399819895288 30.6388954973822 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.56004256737208 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 18