usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 33.8258235294118 22.2600588235294 27.4928823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 960 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 611 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 611 Number of spheres polar: 308, nonpolar: 234, out of current total: 611 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.82926 43.19162 12.43395 32.18417 17.59721 37.48540 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 158 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 115 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 77 Spheres center of coords (x y z): 34.5516515584416 24.2972584415584 29.7927235064935 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.18311214182272 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 17