usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 34.11375 22.9294 28.43985
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 980
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 585
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 585
Number of spheres polar: 302, nonpolar: 232, out of current total: 585
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.11476 43.35402 16.41180 32.76640 18.45523 38.16834
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 274
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 220
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 161
Spheres center of coords (x y z): 34.7310863354037 24.5513037267081 30.6576157763975
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.59268253555688
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 20