usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 26.0739534883721 -1.47932558139535 52.4718604651163 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1189 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 753 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 743 Number of spheres polar: 197, nonpolar: 306, out of current total: 743 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.22392 36.04616 -11.46970 8.46637 43.24531 60.07112 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 439 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 346 Spheres center of coords (x y z): 27.0811081213873 0.191171502890173 52.5401284393064 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.07689962600407 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 43