usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 28.07175 1.42042857142857 51.7959642857143
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1172
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 717
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 709
Number of spheres polar: 246, nonpolar: 290, out of current total: 709
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.08596 38.00711 -8.55642 11.39599 42.18130 61.73019
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 253
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 199
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 158
Spheres center of coords (x y z): 27.1673489873418 1.60852455696203 52.6237691772152
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.54933254777281
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 28