usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 33.5187647058824 22.4718235294118 27.6120588235294 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1062 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 656 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 656 Number of spheres polar: 336, nonpolar: 263, out of current total: 656 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.55190 43.41975 13.91951 32.33100 17.67302 37.58212 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 150 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 120 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 86 Spheres center of coords (x y z): 34.8939434883721 24.3825187209302 30.2533261627907 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.26083091915282 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 17