usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 34.044 22.5656111111111 27.8814444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1158 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 714 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 714 Number of spheres polar: 388, nonpolar: 271, out of current total: 714 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.08679 43.49990 16.24342 30.00315 17.90644 37.86531 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 168 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 124 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 92 Spheres center of coords (x y z): 35.7351057608696 24.4123217391304 30.6465481521739 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.20888422638397 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 18