usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 34.0732105263158 22.6584210526316 28.0864736842105 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1148 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 715 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 715 Number of spheres polar: 398, nonpolar: 265, out of current total: 715 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.09354 43.64182 16.28370 32.58948 18.11038 38.03339 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 246 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 193 Spheres center of coords (x y z): 35.3929394818653 24.3284615544042 30.6894193264249 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.16131934948911 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 19