usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 33.824947368421 22.5936315789474 27.9641578947368 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1136 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 737 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 737 Number of spheres polar: 437, nonpolar: 225, out of current total: 737 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.93498 43.78732 12.77947 32.58885 17.98231 37.94660 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 169 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 129 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 87 Spheres center of coords (x y z): 35.4530882758621 24.3272659770115 30.2505003448276 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.47444817257746 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 19