usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 33.6831578947368 22.5446315789474 27.9038947368421 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1082 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 732 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 732 Number of spheres polar: 446, nonpolar: 226, out of current total: 732 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.84245 43.46444 16.22975 32.18445 17.92484 37.84705 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 122 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 90 Spheres center of coords (x y z): 35.3568883333333 24.209475 30.1624747777778 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.27100494579911 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 19