usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 33.6831578947368 22.5446315789474 27.9038947368421 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1082 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 732 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 732 Number of spheres polar: 446, nonpolar: 226, out of current total: 732 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.84245 43.46444 16.22975 32.18445 17.92484 37.84705 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 323 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 193 Spheres center of coords (x y z): 35.3865319689119 24.3264830051814 30.5063315025907 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.46740758470316 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 19