usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 34.3912777777778 22.5627222222222 28.0077777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1024 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 654 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 654 Number of spheres polar: 337, nonpolar: 263, out of current total: 654 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.40887 43.80130 16.33980 32.28962 18.04376 37.98118 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 301 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 184 Spheres center of coords (x y z): 35.5285932608696 24.4506595108696 30.7923046195652 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.15455315418456 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 18