usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 33.0893 21.6225 26.5473 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1010 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 766 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 766 Number of spheres polar: 360, nonpolar: 248, out of current total: 766 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.25536 43.05153 14.24547 31.59820 16.66567 36.49946 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 148 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 109 Spheres center of coords (x y z): 36.1422555045872 25.1124410091743 30.1233311926605 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.01820522277715 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 10