usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 32.8465 21.6338333333333 26.6419166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 964 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 700 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 700 Number of spheres polar: 381, nonpolar: 238, out of current total: 700 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.89290 42.80875 12.45860 31.01740 16.82615 36.60334 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 156 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 113 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 81 Spheres center of coords (x y z): 35.3881522222222 24.0748080246914 29.8975465432099 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.16437263678251 Final number of output spheres is: 45 Number of polar spheres: 31 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 12