usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 33.6715333333333 22.1717333333333 27.2897333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1032 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 659 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 659 Number of spheres polar: 344, nonpolar: 247, out of current total: 659 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.84934 43.66091 16.37771 32.16568 17.32342 37.28226 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 129 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 92 Spheres center of coords (x y z): 35.1679634782609 24.012617173913 30.1171306521739 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.58644226103349 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 15