usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 18.0391304347826 12.2373043478261 56.0004782608696 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1103 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 617 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 596 Number of spheres polar: 147, nonpolar: 268, out of current total: 596 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.05675 27.62847 2.34148 22.13493 46.07674 62.95716 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 170 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 144 Spheres center of coords (x y z): 18.7411152083333 10.167391875 55.2141090972222 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.92471910436369 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 23