usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 39.7324736842105 37.4623684210526 30.4306842105263
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 938
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 630
WARNING: removing a crystallographic sphere that is distance 7.13503735098843 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 624
Number of spheres polar: 191, nonpolar: 346, out of current total: 624
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.91195 49.10615 27.58881 47.25378 20.48375 40.39210
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 299
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 260
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 160
Spheres center of coords (x y z): 38.3641335625 36.499676375 32.5402745625
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.24722315556556
Final number of output spheres is: 60
Number of polar spheres: 7
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 18