usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 33.6998421052632 22.782 27.9433157894737 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1012 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 670 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 670 Number of spheres polar: 388, nonpolar: 221, out of current total: 670 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.85114 43.59627 13.26075 32.60311 17.95833 37.91759 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 253 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 35.5555016129032 24.5272760752688 30.7884324731182 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.49579392433753 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 19