usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 39.6937 38.39865 31.6123
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 903
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 595
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 594
Number of spheres polar: 171, nonpolar: 284, out of current total: 594
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.83681 49.56839 28.42323 47.84934 21.72640 41.48283
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 323
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 287
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 272
Spheres center of coords (x y z): 40.5440737867647 37.6275923161765 33.1675857352941
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.37453265245042
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 20