usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 33.8188421052632 22.6771052631579 28.0175789473684 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1157 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 780 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 780 Number of spheres polar: 439, nonpolar: 269, out of current total: 780 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.12609 43.54541 13.79403 32.53500 18.02875 38.00425 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 134 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 99 Spheres center of coords (x y z): 35.459086969697 24.4029625252525 30.31381 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.1543735899985 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 19