usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 34.4855652173913 23.3472173913043 28.8860869565217 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1223 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 621 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 621 Number of spheres polar: 331, nonpolar: 238, out of current total: 621 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.56074 44.47018 16.54300 33.30600 18.88635 38.83976 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 275 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 191 Spheres center of coords (x y z): 35.0652632984293 24.5553260732984 30.4342745026178 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.35522411049773 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 23