usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 17.9791304347826 12.0910434782609 55.7471304347826 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 938 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 600 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 581 Number of spheres polar: 165, nonpolar: 285, out of current total: 581 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.01898 27.28080 2.12346 22.08182 45.75629 61.54300 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 262 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 228 Spheres center of coords (x y z): 18.9665692982456 9.02821557017544 54.4116127192982 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64269836039963 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 23