usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 38.1676842105263 35.5597368421053 30.036
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1341
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 787
Number of spheres polar: 253, nonpolar: 440, out of current total: 787
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.20029 48.16197 25.57170 45.50276 20.17182 40.01863
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 244
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 194
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 134
Spheres center of coords (x y z): 38.6361555223881 38.1455993283582 30.6220390298507
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.63953455537142
Final number of output spheres is: 45
Number of polar spheres: 13
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 19