usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 39.3700714285714 36.3735357142857 29.8460714285714
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1214
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 783
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 780
Number of spheres polar: 233, nonpolar: 447, out of current total: 780
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.46451 49.09766 26.44892 46.21286 19.86400 39.82049
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 315
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 230
Spheres center of coords (x y z): 38.8748609130435 37.4536896086956 29.8970544782609
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.68995865873692
Final number of output spheres is: 60
Number of polar spheres: 8
Number of nonpolar spheres: 46
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 28