usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 33.8166111111111 22.4021111111111 27.6440555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 933 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 650 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 650 Number of spheres polar: 353, nonpolar: 220, out of current total: 650 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.85202 43.27954 12.41527 32.33950 17.66931 37.57514 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 167 Spheres center of coords (x y z): 34.2721404790419 24.409152754491 30.337198263473 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.12762858666812 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 18