usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 33.3926875 22.0975625 27.3276875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 928 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 605 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 605 Number of spheres polar: 337, nonpolar: 203, out of current total: 605 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.39504 43.34641 12.35943 32.03729 17.41282 37.29676 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 278 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 170 Spheres center of coords (x y z): 35.168162 24.1104931764706 30.0411483529412 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.65974829466782 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 16