usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 35.1241923076923 23.6300384615385 29.7156923076923 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1179 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 592 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 592 Number of spheres polar: 293, nonpolar: 253, out of current total: 592 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.16501 44.92379 17.46254 33.58531 19.73904 39.55761 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 259 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 220 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 35.1438624861878 24.713427237569 30.9617329834254 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.40676639799568 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 26