usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 34.7585384615385 24.1997692307692 28.4102692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1426 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 805 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 805 Number of spheres polar: 407, nonpolar: 253, out of current total: 805 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.75891 44.49114 16.19372 34.10797 18.41060 38.40440 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 216 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 160 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 123 Spheres center of coords (x y z): 35.9626180487805 25.2902243902439 30.6992180487805 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.01535653946757 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 26