usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 32.7671875 22.5305625 27.205 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 950 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 725 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 725 Number of spheres polar: 422, nonpolar: 212, out of current total: 725 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.77491 42.76298 12.92627 30.65400 17.28320 37.04512 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 179 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 141 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 98 Spheres center of coords (x y z): 34.7452120408163 24.3725636734694 30.0490943877551 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.99638368679263 Final number of output spheres is: 45 Number of polar spheres: 29 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 16