usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 33.9216 22.835 28.04405 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1156 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 766 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 766 Number of spheres polar: 450, nonpolar: 247, out of current total: 766 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.95927 43.81273 13.90723 32.63013 18.04538 38.03714 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 335 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 265 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 35.7834684848485 24.5327624747475 30.8392307070707 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.45686962591109 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 20