usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 18.5934166666667 13.6694166666667 54.0974166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1088 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 636 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 631 Number of spheres polar: 206, nonpolar: 288, out of current total: 631 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.68725 28.47570 3.68037 23.54837 44.10010 61.66318 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 332 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 290 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 256 Spheres center of coords (x y z): 18.156868984375 11.6064788671875 54.2237221875 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52463440833855 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 24