usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 34.6839615384615 23.8333846153846 30.2076153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1169 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 591 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 591 Number of spheres polar: 305, nonpolar: 243, out of current total: 591 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.70561 44.23563 16.33367 33.81072 20.33874 39.85560 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 268 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 223 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 182 Spheres center of coords (x y z): 35.2157658241758 24.8046296703297 30.7223761538462 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.15657952746994 Final number of output spheres is: 60 Number of polar spheres: 37 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26