usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 35.0077916666667 23.44175 29.40275 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1237 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 622 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 622 Number of spheres polar: 340, nonpolar: 236, out of current total: 622 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.01335 43.17857 16.61692 33.42731 19.41554 39.31208 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 165 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 120 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 92 Spheres center of coords (x y z): 35.5397432608696 24.6774160869565 30.8801809782609 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.36732139468864 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24