usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 32.969 22.732 27.4065 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 995 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 664 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 664 Number of spheres polar: 337, nonpolar: 266, out of current total: 664 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.99858 42.92274 13.12817 32.55638 17.40860 37.24636 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 133 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 99 Spheres center of coords (x y z): 35.0560825252525 24.649702020202 30.3064106060606 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.07944124850012 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 16