usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 32.5198125 22.692875 26.972 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1026 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 706 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 705 Number of spheres polar: 351, nonpolar: 302, out of current total: 705 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.56441 42.51849 17.48479 32.43514 17.12529 36.89941 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 185 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 136 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 103 Spheres center of coords (x y z): 34.6376327184466 24.6522444660194 30.0193477669903 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.21285298520594 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 16