usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 32.5021176470588 22.7886470588235 26.9402941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 913 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 574 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 574 Number of spheres polar: 412, nonpolar: 103, out of current total: 574 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.52657 42.49627 12.81814 32.78782 17.06709 36.91361 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 278 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 136 Spheres center of coords (x y z): 35.12370875 23.7320352941177 29.4420502941176 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.02722210532048 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17