usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 64.2536086956522 -20.4358695652174 37.6002173913043 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1136 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 746 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 746 Number of spheres polar: 238, nonpolar: 384, out of current total: 746 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 54.29428 74.16819 -30.35186 -10.46499 27.85356 47.58880 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 247 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 204 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 180 Spheres center of coords (x y z): 66.0377506111111 -20.3161886111111 38.808436 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.19163350295386 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 23