usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 24.6611666666667 24.3835833333333 19.03975 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 821 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 586 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 586 Number of spheres polar: 327, nonpolar: 190, out of current total: 586 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.77723 34.40530 14.38861 34.34779 9.18637 27.16775 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 153 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 115 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 91 Spheres center of coords (x y z): 25.5602124175824 21.1286285714286 15.1783192307692 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.67637241081776 Final number of output spheres is: 45 Number of polar spheres: 28 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 12