DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-08.c.bkslab.org 13-Mar-12 14:16:33 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: /raid3/people/mysinger/pxc/dude/original/dud_lig_gpb_0001.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1649440 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 20.10800 15.57700 9.258999 grid max 53.60800 55.07700 51.25900 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 39 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 10.80577 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C04134464 1054 767766 14 486 552.0 0.32 E C04134464 6 -22.27 -19.42 8.27 5.35 -28.07 2 C04134464 945 455211 14 162 743.4 0.22 E C04134464 6 -16.39 -9.33 4.43 2.89 -18.40 3 C03833808 544 477926 15 486 70.5 0.21 E C03833808 6 -19.97 -18.04 6.97 5.44 -25.60 4 C02046793 14439 6847164 30 459 1365.1 5.73 E C02046793 2 -3.42 -27.50 2.48 -3.08 -31.52 5 C02046793 3525 3268556 30 404 1425.5 2.72 E C02046793 3 -29.67 -29.33 25.05 -2.47 -36.42 6 C02046793 8203 5894467 30 190 1357.6 4.65 E C02046793 2 -10.67 -28.39 3.48 -3.04 -38.62 7 C02046793 14498 7671499 30 721 2043.8 6.59 E C02046793 2 -3.64 -27.32 2.78 -2.99 -31.16 8 C02046793 3906 2818293 30 658 3088.0 2.45 E C02046793 3 -30.02 -19.86 26.46 -2.00 -25.42 9 C02046793 8201 6036939 30 277 5752.0 4.80 E C02046793 2 -38.90 -28.36 28.97 -2.62 -40.91 10 C04134453 543 649826 14 1620 51.2 0.30 E C04134453 6 -14.37 -6.99 2.82 2.28 -16.27 11 C04642456 7033 193510 28 6 474.4 0.40 E C04642456 3 -12.76 -19.10 7.54 -1.76 -26.08 12 C04642456 7032 196457 28 6 51.6 0.40 E C04642456 3 -14.17 -20.16 8.75 -2.20 -27.78 13 C03833806 718 169922 21 162 108.4 0.11 E C03833806 6 -14.82 -13.84 5.77 2.77 -20.11 14 C03815614 532 393568 12 243 357.8 0.17 E C03815614 6 -13.02 -14.99 2.75 3.77 -21.48 15 C03833809 337 205922 16 243 92.0 0.11 E C03833809 6 -16.72 -11.48 4.38 4.15 -19.67 16 C03833816 772 137473 18 81 97.9 0.09 E C03833816 5 -14.22 -5.46 2.20 2.22 -15.26 17 C03833817 673 129763 17 81 220.2 0.08 E C03833817 5 -13.66 -5.76 2.27 2.29 -14.87 18 C03833817 579 116166 17 81 53.4 0.07 E C03833817 5 -12.96 -15.12 4.46 4.60 -19.02 19 C03833807 544 497786 14 486 578.0 0.21 E C03833807 6 -16.84 -18.66 6.23 4.94 -24.32 20 C04134463 354 402354 19 11664 238.1 0.19 E C04134463 6 -15.94 -16.40 5.29 2.72 -24.33 21 C03833806 818 173205 21 162 236.1 0.11 E C03833806 6 -15.37 -5.56 2.34 2.59 -16.01 22 C03833806 1880 347290 21 162 407.0 0.23 E C03833806 6 -12.97 -11.22 4.75 3.10 -16.35 23 C03833816 925 194090 18 243 199.0 0.11 E C03833816 6 -11.93 -17.75 5.41 4.43 -19.85 24 C04134465 1133 419260 12 27 685.5 0.23 E C04134465 4 -8.86 -14.54 3.14 2.16 -18.10 25 C03833818 989 182347 18 81 323.9 0.12 E C03833818 5 -8.49 -18.11 4.71 4.45 -17.43 26 C04134455 5444 7532135 22 6723 5583.8 16.04 E C04134455 2 -12.44 -22.04 3.60 0.62 -30.26 27 C04134455 555 843366 22 40338 616.4 0.47 E C04134455 6 -13.30 -21.43 4.67 3.65 -26.42 28 C04134454 835 982071 18 15552 47.0 0.39 E C04134454 7 -20.48 -11.10 4.46 2.58 -24.53 29 C03833800 336 242078 12 243 14.9 0.10 E C03833800 6 -15.71 -14.33 3.77 5.43 -20.85 30 C03993547 2219 345248 28 16 200.3 0.50 E C03993547 4 -3.92 -18.74 3.60 -3.17 -22.24 31 C03993547 13456 1428187 28 7 2389.1 2.18 E C03993547 2 -2.21 -17.01 1.07 -2.95 -21.09 32 C03993547 5373 1456870 28 24 2097.6 1.70 E C03993547 5 -2.32 -14.36 1.78 -2.24 -17.14 33 C03993547 13495 2052302 28 24 4324.3 2.63 E C03993547 2 -3.26 -16.92 4.04 -2.78 -18.91 34 C03833799 544 501530 19 3888 88.7 0.24 E C03833799 6 -14.95 -15.71 4.82 3.33 -22.51 35 C04134471 1279 889641 19 1296 972.4 0.41 E C04134471 7 -16.59 -8.27 2.18 2.92 -19.76 36 C04134471 2692 1603253 19 648 1520.5 0.82 E C04134471 7 -18.32 -13.50 4.89 3.64 -23.30 37 C04134457 544 512670 15 486 84.5 0.23 E C04134457 6 -15.02 -18.69 4.61 3.08 -26.02 38 C03833809 337 197469 16 243 92.3 0.13 E C03833809 6 -13.40 -5.03 1.29 2.40 -14.74 39 C03833814 352 346115 16 810 210.2 0.15 E C03833814 6 -14.67 -11.18 3.86 3.44 -18.55 40 C04134448 552 375518 14 243 180.8 0.19 E C04134448 6 -17.16 -9.67 4.74 1.74 -20.35 41 C03833812 11024 6096534 20 324 4942.5 3.88 E C03833812 2 -10.19 -19.64 4.95 0.47 -24.42 42 C03833812 354 204442 20 972 72.6 0.12 E C03833812 6 -13.39 -12.89 3.29 1.79 -21.20 43 C04134460 544 580286 16 1458 231.3 0.25 E C04134460 6 -14.75 -15.70 5.02 2.42 -23.02 44 C04134459 1405 887372 12 243 1283.3 0.37 E C04134459 6 -15.63 -17.03 4.24 4.93 -23.49 45 C03861213 283 185852 12 243 280.3 0.07 E C03861213 6 -13.93 -15.78 4.55 5.70 -19.46 46 C03833798 7476 6801786 20 12150 7496.2 3.82 E C03833798 3 -12.63 -23.77 4.71 2.90 -28.80 47 C03833798 351 312022 20 9720 317.6 0.14 E C03833798 6 -14.65 -17.01 3.60 2.92 -25.14 48 C03833798 7475 6476948 20 13608 4507.8 4.01 E C03833798 3 -14.15 -22.50 3.52 1.15 -31.98 49 C03833798 1386 1170461 20 6804 649.7 0.51 E C03833798 6 -6.95 -21.43 3.01 0.25 -25.12 50 C03833801 1809 868210 21 648 1337.2 0.51 E C03833801 3 -12.11 -21.50 4.85 2.21 -26.55 51 C03833801 1071 601459 21 2430 658.2 0.25 E C03833801 6 -10.09 -20.49 4.87 2.30 -23.42 52 C03833801 1809 1023754 21 810 1128.5 0.56 E C03833801 3 -15.38 -19.93 4.86 2.04 -28.40 53 C03833801 3028 1893528 21 1620 1091.6 0.79 E C03833801 6 -15.11 -20.27 5.68 2.56 -27.14 54 C03833811 352 312916 15 486 148.7 0.14 E C03833811 6 -15.35 -11.06 4.36 3.49 -18.56 55 C04134469 354 351244 16 1215 155.5 0.15 E C04134469 6 -14.99 -10.16 3.95 2.58 -18.62 56 C03833803 1813 1093883 21 810 1261.4 0.60 E C03833803 3 -16.05 -18.16 3.83 1.54 -28.83 57 C03833803 544 485269 21 2430 139.7 0.20 E C03833803 6 -11.44 -22.35 4.53 2.54 -26.72 58 C03833802 5441 3542560 20 486 2657.3 2.13 E C03833802 2 -8.80 -23.49 3.69 1.09 -27.51 59 C03833802 544 414357 20 1944 176.0 0.20 E C03833802 6 -9.14 -21.60 3.53 0.60 -26.62 60 C04134456 1054 680151 15 486 433.7 0.30 E C04134456 6 -16.19 -6.27 3.36 2.49 -16.61 61 C04134456 3038 1808065 15 486 2691.4 0.78 E C04134456 6 -13.56 -13.44 5.64 2.87 -18.49 62 C04134470 354 322446 15 486 129.1 0.14 E C04134470 6 -14.57 -8.80 2.85 2.13 -18.39 63 C04134449 654 488890 15 729 207.1 0.20 E C04134449 7 -17.46 -10.43 3.45 2.01 -22.44 64 C04134450 544 594465 20 12150 254.2 0.26 E C04134450 6 -11.08 -18.60 5.77 4.34 -19.57 65 C04134466 544 491156 15 486 66.8 0.22 E C04134466 6 -18.64 -17.50 6.57 4.06 -25.51 66 C04134458 544 650366 17 18225 511.5 0.26 E C04134458 6 -17.57 -16.39 5.93 3.39 -24.65 67 C03833810 14439 20874432 22 7695 10023.8 32.73 E C03833810 2 -10.95 -23.69 3.88 0.42 -30.33 68 C03833810 354 458857 22 53865 110.0 0.23 E C03833810 6 -10.45 -21.27 3.34 0.90 -27.48 69 C04134451 840 903913 16 3402 987.5 0.30 E C04134451 7 -18.56 -9.40 1.96 3.64 -22.36 70 C04134467 354 331562 17 4050 44.7 0.16 E C04134467 6 -15.25 -9.47 3.72 2.35 -18.65 71 C04134461 2795 2001034 13 972 582.3 0.70 E C04134461 6 -19.02 -5.67 2.96 2.44 -19.29 72 C04134461 1523 1198888 13 972 788.2 0.42 E C04134461 6 -14.24 -11.80 4.92 3.26 -17.86 73 C04134468 354 347445 16 1701 239.2 0.14 E C04134468 6 -13.43 -20.81 6.32 5.87 -22.05 74 C03833813 917 140138 18 81 272.0 0.08 E C03833813 5 -9.86 -17.61 5.34 4.51 -17.62 75 C03833813 760 112606 18 81 74.4 0.07 E C03833813 5 -14.82 -10.39 2.98 3.15 -19.08 76 C04134452 543 707634 17 7290 762.0 0.27 E C04134452 6 -14.98 -15.91 7.26 2.50 -21.13 77 C03833815 352 341822 16 1701 140.7 0.14 E C03833815 6 -15.13 -7.97 2.75 2.48 -17.86 78 C03833805 4923 3470573 21 1458 4219.2 3.06 E C03833805 2 -14.13 -19.36 2.20 -0.44 -31.73 79 C03833805 319 367579 21 5832 346.8 0.17 E C03833805 6 -4.60 -21.49 2.02 -0.86 -24.94 80 C03833804 4923 2935648 21 729 3887.8 1.99 E C03833804 2 -13.58 -21.37 2.82 0.45 -31.69 81 C03833804 347 312279 21 2187 320.1 0.14 E C03833804 6 -3.17 -24.29 3.78 -0.18 -23.86 82 C03833804 4932 3216130 21 1053 1703.2 2.49 E C03833804 2 -10.77 -25.63 3.76 0.22 -32.41 83 C03833804 330 266241 21 1053 18.2 0.14 E C03833804 6 -6.04 -20.37 2.84 0.17 -23.40 84 C04134462 0 0 17 486 0.00 no_match 85 C04134462 544 473109 17 1458 445.1 0.24 E C04134462 6 -6.89 -16.80 4.17 0.33 -19.19 EOF: /raid3/people/mysinger/pxc/dude/original/dud_lig_gpb_0001.db.gz end of file encountered total minimization steps = 8710936 for debugging, time = 121.8600 solvation corrected scores: (a) 1 C02046793 score: -40.908 nathvy = 30 nconfs = 277 2 C02046793 score: -38.625 nathvy = 30 nconfs = 190 3 C02046793 score: -36.424 nathvy = 30 nconfs = 404 4 C03833804 score: -32.410 nathvy = 21 nconfs = 1053 5 C03833798 score: -31.978 nathvy = 20 nconfs = 13608 6 C03833805 score: -31.730 nathvy = 21 nconfs = 1458 7 C03833804 score: -31.688 nathvy = 21 nconfs = 729 8 C02046793 score: -31.515 nathvy = 30 nconfs = 459 9 C02046793 score: -31.157 nathvy = 30 nconfs = 721 10 C03833810 score: -30.334 nathvy = 22 nconfs = 7695 11 C04134455 score: -30.259 nathvy = 22 nconfs = 6723 12 C03833803 score: -28.832 nathvy = 21 nconfs = 810 13 C03833798 score: -28.799 nathvy = 20 nconfs = 12150 14 C03833801 score: -28.400 nathvy = 21 nconfs = 810 15 C04134464 score: -28.071 nathvy = 14 nconfs = 486 16 C04642456 score: -27.779 nathvy = 28 nconfs = 6 17 C03833802 score: -27.507 nathvy = 20 nconfs = 486 18 C03833810 score: -27.481 nathvy = 22 nconfs = 53865 19 C03833801 score: -27.138 nathvy = 21 nconfs = 1620 20 C03833803 score: -26.719 nathvy = 21 nconfs = 2430 21 C03833802 score: -26.617 nathvy = 20 nconfs = 1944 22 C03833801 score: -26.555 nathvy = 21 nconfs = 648 23 C04134455 score: -26.415 nathvy = 22 nconfs = 40338 24 C04642456 score: -26.084 nathvy = 28 nconfs = 6 25 C04134457 score: -26.018 nathvy = 15 nconfs = 486 26 C03833808 score: -25.599 nathvy = 15 nconfs = 486 27 C04134466 score: -25.514 nathvy = 15 nconfs = 486 28 C02046793 score: -25.417 nathvy = 30 nconfs = 658 29 C03833798 score: -25.145 nathvy = 20 nconfs = 9720 30 C03833798 score: -25.122 nathvy = 20 nconfs = 6804 31 C03833805 score: -24.937 nathvy = 21 nconfs = 5832 32 C04134458 score: -24.648 nathvy = 17 nconfs = 18225 33 C04134454 score: -24.533 nathvy = 18 nconfs = 15552 34 C03833812 score: -24.420 nathvy = 20 nconfs = 324 35 C04134463 score: -24.330 nathvy = 19 nconfs = 11664 36 C03833807 score: -24.323 nathvy = 14 nconfs = 486 37 C03833804 score: -23.857 nathvy = 21 nconfs = 2187 38 C04134459 score: -23.491 nathvy = 12 nconfs = 243 39 C03833801 score: -23.415 nathvy = 21 nconfs = 2430 40 C03833804 score: -23.402 nathvy = 21 nconfs = 1053 41 C04134471 score: -23.302 nathvy = 19 nconfs = 648 42 C04134460 score: -23.018 nathvy = 16 nconfs = 1458 43 C03833799 score: -22.509 nathvy = 19 nconfs = 3888 44 C04134449 score: -22.441 nathvy = 15 nconfs = 729 45 C04134451 score: -22.361 nathvy = 16 nconfs = 3402 46 C03993547 score: -22.241 nathvy = 28 nconfs = 16 47 C04134468 score: -22.051 nathvy = 16 nconfs = 1701 48 C03815614 score: -21.484 nathvy = 12 nconfs = 243 49 C03833812 score: -21.199 nathvy = 20 nconfs = 972 50 C04134452 score: -21.134 nathvy = 17 nconfs = 7290 51 C03993547 score: -21.094 nathvy = 28 nconfs = 7 52 C03833800 score: -20.849 nathvy = 12 nconfs = 243 53 C04134448 score: -20.353 nathvy = 14 nconfs = 243 54 C03833806 score: -20.113 nathvy = 21 nconfs = 162 55 C03833816 score: -19.852 nathvy = 18 nconfs = 243 56 C04134471 score: -19.756 nathvy = 19 nconfs = 1296 57 C03833809 score: -19.672 nathvy = 16 nconfs = 243 58 C04134450 score: -19.574 nathvy = 20 nconfs = 12150 59 C03861213 score: -19.458 nathvy = 12 nconfs = 243 60 C04134461 score: -19.288 nathvy = 13 nconfs = 972 61 C04134462 score: -19.190 nathvy = 17 nconfs = 1458 62 C03833813 score: -19.078 nathvy = 18 nconfs = 81 63 C03833817 score: -19.018 nathvy = 17 nconfs = 81 64 C03993547 score: -18.912 nathvy = 28 nconfs = 24 65 C04134467 score: -18.651 nathvy = 17 nconfs = 4050 66 C04134469 score: -18.621 nathvy = 16 nconfs = 1215 67 C03833811 score: -18.560 nathvy = 15 nconfs = 486 68 C03833814 score: -18.552 nathvy = 16 nconfs = 810 69 C04134456 score: -18.487 nathvy = 15 nconfs = 486 70 C04134464 score: -18.399 nathvy = 14 nconfs = 162 71 C04134470 score: -18.388 nathvy = 15 nconfs = 486 72 C04134465 score: -18.105 nathvy = 12 nconfs = 27 73 C03833815 score: -17.864 nathvy = 16 nconfs = 1701 74 C04134461 score: -17.858 nathvy = 13 nconfs = 972 75 C03833813 score: -17.620 nathvy = 18 nconfs = 81 76 C03833818 score: -17.434 nathvy = 18 nconfs = 81 77 C03993547 score: -17.144 nathvy = 28 nconfs = 24 78 C04134456 score: -16.610 nathvy = 15 nconfs = 486 79 C03833806 score: -16.346 nathvy = 21 nconfs = 162 80 C04134453 score: -16.269 nathvy = 14 nconfs = 1620 81 C03833806 score: -16.012 nathvy = 21 nconfs = 162 82 C03833816 score: -15.255 nathvy = 18 nconfs = 81 83 C03833817 score: -14.872 nathvy = 17 nconfs = 81 84 C03833809 score: -14.741 nathvy = 16 nconfs = 243 Date and Time: 13-Mar-12 14:18:40 elapsed time (sec): 121.9000