Running Epik version     2.1209
Epik. Copyright Schrodinger, LLC. All rights reserved.

Input file name:                        A.mae
Output file name:                       B.mae
Structure adjustment calculation requested.
  Target pH set to 7.000
pHt tolerance set to 1.000000e+00
Epik minmium tautomer probability set to 2.000000e-01

Adjusting structures for pH 7.000000e+00 and minimum probability 1.000000e-01
Solvent model name:                     water
Using Incremental parameter file version: 1.0004
Jobcontrol is not being used for this specific Epik calculation.
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Processing Input Structure #1
        Title: TEMP00000001
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            40   Conj_Acid 12.03
                                            47   Conj_Acid  9.32
                                            48   Conj_Acid  9.09
                                            49   Conj_Acid  9.28
                                            21   Conj_Base -2.23
 pKa penalty:                                 0.01 kcal/mol
     Charging penalty:                        0.00 kcal/mol
     Neutralization penalty:                  0.01 kcal/mol
 Overall Penalty (tautomerization included): -0.00 kcal/mol
 Total Charge: 1
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Processing Input Structure #2
        Title: TEMP00000002
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            40   Conj_Acid 12.03
                                            47   Conj_Acid  9.32
                                            48   Conj_Acid  9.09
                                            49   Conj_Acid  9.28
                                            21   Conj_Base -2.23
 pKa penalty:                                 0.01 kcal/mol
     Charging penalty:                        0.00 kcal/mol
     Neutralization penalty:                  0.01 kcal/mol
 Overall Penalty (tautomerization included): -0.00 kcal/mol
 Total Charge: 1
---------------------------