There are 28 ligand heavy atoms
Ligand center of coords (x y z): 39.3720357142857 36.4361785714286 29.7552142857143
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 11172
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8410
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8285
Number of spheres polar: 3883, nonpolar: 3492, out of current total: 8285
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.37840 50.22200 24.43820 48.43460 17.76640 41.75360
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 961
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 604
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 535
Spheres center of coords (x y z): 41.0086123364486 37.9595992523365 29.6595338317757
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 9.27539979191519
Final number of output spheres is: 120
Number of polar spheres: 51
Number of nonpolar spheres: 62
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 28