usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 38.747724137931 44.0286551724138 43.1756896551724 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1891 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 942 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 942 Number of spheres polar: 196, nonpolar: 650, out of current total: 942 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.87663 48.68518 34.03801 53.97649 33.54500 53.13131 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 275 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 173 Spheres center of coords (x y z): 37.4947491907514 42.4142543930635 43.0047327745665 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.20340214324746 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 29