usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 51.2307857142857 43.3615714285714 -2.33228571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1897 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 921 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 921 Number of spheres polar: 125, nonpolar: 687, out of current total: 921 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.23405 61.22342 33.37180 53.26406 -12.31095 7.14785 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 465 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 406 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 355 Spheres center of coords (x y z): 55.1652840563381 42.4882812112676 -2.98969476056338 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.50131556662828 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 28