usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 5.57328571428572 -35.3124285714286 -1.762
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1365
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 657
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 657
Number of spheres polar: 162, nonpolar: 407, out of current total: 657
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.38561 15.54994 -45.30831 -25.46878 -11.67716 7.57665
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 343
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 294
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 181
Spheres center of coords (x y z): 8.80519535911603 -33.2982133149171 -3.72618359116022
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.9620851570952
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 21